|
週次 |
日期 |
單元主題 |
|
第1週 |
09/15 |
Introduction to Structural Bioinformatics |
|
第2週 |
09/22 |
Genomics Basics (HW1: transcription and translation) |
|
第3週 |
09/29 |
Biological databases (HW2 database parsing) |
|
第4週 |
10/06 |
Sequences and sequence alignment (HW3: SW, FASTA, BLAST) |
|
第5週 |
10/13 |
Multiple sequence alignment / hierarchical clustering (HW4: clustalW and PSI-BLAST) |
|
第6週 |
10/20 |
Profiles / HMM / clustering |
|
第7週 |
10/27 |
Family hierarchy (HW5: HomoClust) |
|
第8週 |
11/03 |
Patterns (HW6: MAGIIC-PRO and seeMotif) |
|
第9週 |
11/10 |
Classification |
|
第10週 |
11/17 |
Classification: Secondary structure prediction (HW7: Constructing profiles PSSMs) |
|
第11週 |
11/24 |
Midterm |
|
第12週 |
12/01 |
Other prediction applications (HW8: DSSP + PSSM) |
|
第13週 |
12/08 |
Protein disorder (HW9: prediction of secondary structure prediction) |
|
第14週 |
12/15 |
Structure description / structure comparison |
|
第15週 |
12/22 |
Present proposal of final project / structure alignment |
|
第16週 |
12/29 |
Structure prediction / Structure alignment |
|
第17週 |
01/05 |
Protein structure comparison and prediction |
|
第18週 |
01/12 |
Demo of final project |